-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1789

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 37, 78
Couldn't classify 1858, 1887
Sorry, prediction GeneMark_model.109735_t fails validation.
(GGT)	 AG	37-78	GT	TAG
(CGA)	 AG	540-647	GT	GAG
(AAA)	 AG	673-732	GT	TGG
(GTC)	 AG	799-843	GT	AGG
(GTG)	 AG	874-888	GT	AGG
(GTG)	 AG	933-947	GT	AGG
(CTC)	 AG	984-1052	GT	GAG
(CCC)	 AG	1494-1601	GT	GAG
(GAG)	 AG	1623-1715	GT	GAG
(GAA)	 AG	1737-1835	GT	GAG
(GGA)	 AG	1858-1887	GT	GAG
-recovered GeneMark_model.109735_t, internal, 37, 78
-recovered GeneMark_model.109735_t, internal, 540, 647
-recovered GeneMark_model.109735_t, internal, 673, 732
-recovered GeneMark_model.109735_t, internal, 799, 843
-recovered GeneMark_model.109735_t, internal, 874, 888
-recovered GeneMark_model.109735_t, internal, 933, 947
-recovered GeneMark_model.109735_t, internal, 984, 1052
-recovered GeneMark_model.109735_t, internal, 1494, 1601
-recovered GeneMark_model.109735_t, internal, 1623, 1715
-recovered GeneMark_model.109735_t, internal, 1737, 1835
-recovered GeneMark_model.109735_t, internal, 1858, 1887

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 850, 981
Sorry, prediction Augustus_model.g41826.t1 fails validation.
(ACG)	 AG	850-981	GT	GGG
(GGA)	 AG	1329-1415	AT	AGA
-recovered Augustus_model.g41826.t1, terminal, 1329, 1415
-recovered Augustus_model.g41826.t1, internal, 850, 981
Couldn't classify 850, 981
Sorry, prediction GlimmerHMM_glimmerT_62827-T1 fails validation.
(ACG)	 AG	850-981	GT	GGG
(GGA)	 AG	1329-1415	AT	AGA
-recovered GlimmerHMM_glimmerT_62827-T1, terminal, 1329, 1415
-recovered GlimmerHMM_glimmerT_62827-T1, internal, 850, 981
Couldn't classify 850, 981
Sorry, prediction snap_scaffold_1789-snap.1-T1 fails validation.
(ACG)	 AG	850-981	GT	GGG
(GGA)	 AG	1329-1415	AT	AGA
-recovered snap_scaffold_1789-snap.1-T1, terminal, 1329, 1415
-recovered snap_scaffold_1789-snap.1-T1, internal, 850, 981

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1940
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support