-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1788

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 75, 109
Couldn't classify 1816, 1926
Sorry, prediction GeneMark_model.109734_t fails validation.
(TCT)	 AG	75-109	GT	GAG
(AGG)	 AG	155-181	GT	AAG
(AGA)	 AG	203-348	GT	GGG
(ACC)	 AG	1326-1350	GT	GTG
(AAC)	 AG	1647-1787	GT	GGG
(GGG)	 AG	1816-1926	GT	GCG
-recovered GeneMark_model.109734_t, internal, 75, 109
-recovered GeneMark_model.109734_t, internal, 155, 181
-recovered GeneMark_model.109734_t, internal, 203, 348
-recovered GeneMark_model.109734_t, internal, 1326, 1350
-recovered GeneMark_model.109734_t, internal, 1647, 1787
-recovered GeneMark_model.109734_t, internal, 1816, 1926

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1941
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support