-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1787

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62825-T1
Couldn't classify 1, 92
Sorry, prediction Augustus_model.g41825.t1 fails validation.
(TCA)	 GG	1-92	GT	AGG
(GTG)	 AG	297-532	GT	CAG
(CCG)	 AG	1434-1809	GA	GAG
-recovered Augustus_model.g41825.t1, terminal, 1434, 1809
-recovered Augustus_model.g41825.t1, internal, 297, 532
Valid prediction for GlimmerHMM_glimmerT_62826-T1
Couldn't classify 10, 92
Couldn't classify 1873, 1893
Sorry, prediction GeneMark_model.109733_t fails validation.
(GGA)	 AG	10-92	GT	AGG
(GTG)	 AG	297-532	GT	CAG
(GAG)	 AG	821-850	GT	AGG
(GAG)	 AG	885-893	GT	AGG
(GGA)	 AG	919-927	GT	AGG
(AGG)	 AG	951-976	GT	AGG
(AAG)	 AG	1346-1800	GT	TGG
(GGG)	 AG	1822-1835	GT	AGG
(GGC)	 AG	1873-1893	GT	AGG
-recovered GeneMark_model.109733_t, internal, 10, 92
-recovered GeneMark_model.109733_t, internal, 297, 532
-recovered GeneMark_model.109733_t, internal, 821, 850
-recovered GeneMark_model.109733_t, internal, 885, 893
-recovered GeneMark_model.109733_t, internal, 919, 927
-recovered GeneMark_model.109733_t, internal, 951, 976
-recovered GeneMark_model.109733_t, internal, 1346, 1800
-recovered GeneMark_model.109733_t, internal, 1822, 1835
-recovered GeneMark_model.109733_t, internal, 1873, 1893
Valid prediction for snap_scaffold_1787-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1942
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support