-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1786

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 389, 603
Couldn't classify 1750, 1875
Sorry, prediction snap_scaffold_1786-snap.2-T1 fails validation.
(GAG)	 AG	389-603	GT	AGG
(GGT)	 AG	1360-1603	GT	CGG
(GGG)	 AG	1750-1875	GT	TGG
add_exon() Sorry, snap_scaffold_1786-snap.2-T1 389-603-terminal-2 is invalid.
-recovered snap_scaffold_1786-snap.2-T1, terminal, 389, 603
-recovered snap_scaffold_1786-snap.2-T1, internal, 389, 603
-recovered snap_scaffold_1786-snap.2-T1, internal, 1360, 1603
-recovered snap_scaffold_1786-snap.2-T1, internal, 1750, 1875

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 39, 598
Couldn't classify 1290, 1601
Sorry, prediction GeneMark_model.109732_t fails validation.
(ACT)	 AG	39-598	GT	ACG
(AGA)	 AG	628-742	GT	AGG
(GTG)	 AG	1290-1601	GT	CGG
-recovered GeneMark_model.109732_t, internal, 39, 598
-recovered GeneMark_model.109732_t, internal, 628, 742
-recovered GeneMark_model.109732_t, internal, 1290, 1601
Couldn't classify 1290, 1601
Sorry, prediction Augustus_model.g41824.t1 fails validation.
(ATG)	 CC	30-641	GT	AGG
(GTG)	 AG	1290-1601	GT	CGG
-recovered Augustus_model.g41824.t1, initial, 30, 641
-recovered Augustus_model.g41824.t1, internal, 1290, 1601
Valid prediction for GlimmerHMM_glimmerT_62824-T1
Couldn't classify 18, 641
Couldn't classify 1290, 1337
Sorry, prediction pasa_asmbl_19597.p2 fails validation.
(CCC)	 CC	18-641	GT	AGG
(GTG)	 AG	1290-1337	GA	TGG
Couldn't classify 1290, 1601
Sorry, prediction snap_scaffold_1786-snap.1-T1 fails validation.
(ATG)	 CC	30-641	GT	AGG
(AGA)	 AG	689-742	GT	AGG
(GTG)	 AG	1290-1601	GT	CGG
-recovered snap_scaffold_1786-snap.1-T1, initial, 30, 641
-recovered snap_scaffold_1786-snap.1-T1, internal, 689, 742
-recovered snap_scaffold_1786-snap.1-T1, internal, 1290, 1601

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1914, rend_intergenic: 389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1943
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1914, rend_intergenic: 389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support