-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1784

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62823-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62823-T1 1584-1921-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1893, 1929
Sorry, prediction GeneMark_model.109730_t fails validation.
(ATG)	 GG	991-999	GT	GGG
(GAG)	 AG	1035-1048	GT	AAG
(GGA)	 AG	1371-1439	GT	GAG
(ATG)	 AG	1572-1580	GT	GGG
(AGA)	 AG	1743-1757	GT	GAG
(AGA)	 AG	1789-1815	GT	GAG
(AGA)	 AG	1841-1867	GT	GAG
(GGA)	 AG	1893-1929	GT	AAG
-recovered GeneMark_model.109730_t, initial, 991, 999
add_exon() Sorry, GeneMark_model.109730_t 1572-1580-initial-1 is invalid.
-recovered GeneMark_model.109730_t, initial, 1572, 1580
-recovered GeneMark_model.109730_t, terminal, 1841, 1867
-recovered GeneMark_model.109730_t, internal, 1035, 1048
-recovered GeneMark_model.109730_t, internal, 1371, 1439
-recovered GeneMark_model.109730_t, internal, 1572, 1580
-recovered GeneMark_model.109730_t, internal, 1743, 1757
-recovered GeneMark_model.109730_t, internal, 1789, 1815
-recovered GeneMark_model.109730_t, internal, 1841, 1867
-recovered GeneMark_model.109730_t, internal, 1893, 1929

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1946
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support