-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1783

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1783-snap.2-T1
add_exon() Sorry, snap_scaffold_1783-snap.2-T1 1373-1486-initial-1 is invalid.
add_exon() Sorry, snap_scaffold_1783-snap.2-T1 1674-1836-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62822-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62822-T1 1343-1493-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1755, 1867
Sorry, prediction GeneMark_model.109728_t fails validation.
(ATG)	 GG	1056-1090	GT	GCG
(GGA)	 AG	1180-1222	GT	TCG
(GAG)	 AG	1403-1449	GT	AGG
(AGG)	 AG	1474-1530	GT	AAG
(GGG)	 AG	1755-1867	GT	TAG
-recovered GeneMark_model.109728_t, initial, 1056, 1090
-recovered GeneMark_model.109728_t, internal, 1180, 1222
-recovered GeneMark_model.109728_t, internal, 1403, 1449
-recovered GeneMark_model.109728_t, internal, 1474, 1530
-recovered GeneMark_model.109728_t, internal, 1755, 1867
Valid prediction for snap_scaffold_1783-snap.1-T1
add_exon() Sorry, snap_scaffold_1783-snap.1-T1 1700-1884-terminal-1 is invalid.
Valid prediction for GeneMark_model.109729_t
Valid prediction for Augustus_model.g41823.t1
add_exon() Sorry, Augustus_model.g41823.t1 117-228-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1948
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support