-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1779

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 36, 197
Sorry, prediction GeneMark_model.109721_t fails validation.
(AAA)	 AG	36-197	GC	GAG
(AAA)	 AG	226-231	GT	CAG
(AGA)	 AG	379-415	CA	AAC
-recovered GeneMark_model.109721_t, terminal, 379, 415
-recovered GeneMark_model.109721_t, internal, 36, 197
-recovered GeneMark_model.109721_t, internal, 226, 231

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 154, 242
Sorry, prediction GlimmerHMM_glimmerT_62820-T1 fails validation.
(CTG)	 AG	154-242	GT	AGG
(AGT)	 AG	290-376	AG	AAA
-recovered GlimmerHMM_glimmerT_62820-T1, terminal, 290, 376
-recovered GlimmerHMM_glimmerT_62820-T1, internal, 154, 242
Valid prediction for GlimmerHMM_glimmerT_62819-T1
Couldn't classify 106, 242
Sorry, prediction snap_scaffold_1779-snap.2-T1 fails validation.
(AAA)	 AG	106-242	GT	AGG
(AGT)	 AG	290-376	AG	AAA
-recovered snap_scaffold_1779-snap.2-T1, terminal, 290, 376
-recovered snap_scaffold_1779-snap.2-T1, internal, 106, 242
Couldn't classify 154, 247
Couldn't classify 1153, 1258
Sorry, prediction Augustus_model.g41820.t1 fails validation.
(CTG)	 AG	154-247	GT	AGG
(CCC)	 AG	1153-1258	GT	AGG
-recovered Augustus_model.g41820.t1, internal, 154, 247
-recovered Augustus_model.g41820.t1, internal, 1153, 1258
Couldn't classify 154, 247
Sorry, prediction GeneMark_model.109723_t fails validation.
(CTG)	 AG	154-247	GT	AGG
(TCC)	 AG	292-376	AG	AAA
-recovered GeneMark_model.109723_t, terminal, 292, 376
-recovered GeneMark_model.109723_t, internal, 154, 247
Valid prediction for GeneMark_model.109722_t
Couldn't classify 1610, 1651
Sorry, prediction snap_scaffold_1779-snap.1-T1 fails validation.
(ATG)	 GG	892-977	GT	AAG
(CCC)	 AG	1153-1258	GT	AGG
(GTC)	 AG	1610-1651	GT	AAG
-recovered snap_scaffold_1779-snap.1-T1, initial, 892, 977
-recovered snap_scaffold_1779-snap.1-T1, internal, 1153, 1258
-recovered snap_scaffold_1779-snap.1-T1, internal, 1610, 1651

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1953
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support