-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1775

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1248, 1298
Sorry, prediction GeneMark_model.109716_t fails validation.
(ATG)	 AG	821-829	GT	ATG
(GGT)	 AG	944-972	GT	CAG
(AGA)	 AG	997-1086	GC	GAG
(AGA)	 AG	1248-1298	GT	GAG
-recovered GeneMark_model.109716_t, initial, 821, 829
-recovered GeneMark_model.109716_t, internal, 821, 829
-recovered GeneMark_model.109716_t, internal, 944, 972
-recovered GeneMark_model.109716_t, internal, 997, 1086
-recovered GeneMark_model.109716_t, internal, 1248, 1298
Couldn't classify 30, 252
Sorry, prediction snap_scaffold_1775-snap.1-T1 fails validation.
(AAT)	 AG	30-252	GT	AGG
(GAA)	 AG	855-944	GT	GGG
(AAG)	 AG	1367-1376	AA	AAA
add_exon() Sorry, snap_scaffold_1775-snap.1-T1 30-252-terminal-3 is invalid.
-recovered snap_scaffold_1775-snap.1-T1, terminal, 30, 252
-recovered snap_scaffold_1775-snap.1-T1, terminal, 1367, 1376
-recovered snap_scaffold_1775-snap.1-T1, internal, 30, 252
-recovered snap_scaffold_1775-snap.1-T1, internal, 855, 944

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62818-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62818-T1 187-347-terminal-1 is invalid.
Couldn't classify 1918, 1943
Sorry, prediction GeneMark_model.109715_t fails validation.
(ATG)	 AA	1218-1279	GT	GAG
(AGC)	 AG	1304-1347	GT	TCG
(CGC)	 AG	1708-1819	GT	AGG
(GAA)	 AG	1918-1943	GC	AGG
-recovered GeneMark_model.109715_t, initial, 1218, 1279
-recovered GeneMark_model.109715_t, internal, 1304, 1347
-recovered GeneMark_model.109715_t, internal, 1708, 1819
-recovered GeneMark_model.109715_t, internal, 1918, 1943

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1955
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support