-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1773

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 854, 949
Couldn't classify 1080, 1943
Sorry, prediction GeneMark_model.109713_t fails validation.
(ACG)	 AG	854-949	GT	AAG
(CCA)	 AG	1080-1943	GC	TGG
-recovered GeneMark_model.109713_t, internal, 854, 949
-recovered GeneMark_model.109713_t, internal, 1080, 1943
Couldn't classify 1080, 1930
Sorry, prediction snap_scaffold_1773-snap.1-T1 fails validation.
(ATG)	 AC	798-949	GT	AAG
(CCA)	 AG	1080-1930	GT	GCG
-recovered snap_scaffold_1773-snap.1-T1, initial, 798, 949
-recovered snap_scaffold_1773-snap.1-T1, internal, 1080, 1930

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62817-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62817-T1 1008-1171-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1958
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support