-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1772

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 407, 665
Sorry, prediction Augustus_model.g41818.t1 fails validation.
(CCT)	 AG	407-665	GT	AGG
(ACC)	 AG	1096-1231	GT	AGG
(TGT)	 AG	1308-1356	TT	GAT
-recovered Augustus_model.g41818.t1, terminal, 1308, 1356
-recovered Augustus_model.g41818.t1, internal, 407, 665
-recovered Augustus_model.g41818.t1, internal, 1096, 1231
Couldn't classify 407, 471
Sorry, prediction GeneMark_model.109712_t fails validation.
(CCT)	 AG	407-471	GT	GCG
(GAA)	 AG	492-533	GT	CTG
(GAG)	 AG	633-665	GT	AGG
(GCT)	 AG	773-908	GT	AAG
(ATC)	 AG	1056-1231	GT	AGG
(GAA)	 AG	1258-1318	CT	AGC
-recovered GeneMark_model.109712_t, terminal, 1258, 1318
-recovered GeneMark_model.109712_t, internal, 407, 471
-recovered GeneMark_model.109712_t, internal, 492, 533
-recovered GeneMark_model.109712_t, internal, 633, 665
-recovered GeneMark_model.109712_t, internal, 773, 908
-recovered GeneMark_model.109712_t, internal, 1056, 1231

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1335, 1621
Sorry, prediction snap_scaffold_1772-snap.1-T1 fails validation.
(ATG)	 CA	972-1101	GT	TCG
(TCC)	 AG	1335-1621	GT	TGG
-recovered snap_scaffold_1772-snap.1-T1, initial, 972, 1101
-recovered snap_scaffold_1772-snap.1-T1, internal, 1335, 1621
Valid prediction for GlimmerHMM_glimmerT_62816-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62816-T1 962-1140-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1958
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support