-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1771

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 27, 185
Couldn't classify 1711, 1902
Sorry, prediction GeneMark_model.109711_t fails validation.
(CCA)	 AG	27-185	GT	CTG
(GGG)	 AG	242-247	GT	GAG
(AGA)	 AG	291-317	GT	GAG
(ACA)	 AG	410-478	GT	GCG
(AGG)	 AG	693-749	GT	GAG
(GCC)	 AG	1382-1501	GT	GGG
(CCC)	 AG	1711-1902	GT	AGG
-recovered GeneMark_model.109711_t, internal, 27, 185
-recovered GeneMark_model.109711_t, internal, 242, 247
-recovered GeneMark_model.109711_t, internal, 291, 317
-recovered GeneMark_model.109711_t, internal, 410, 478
-recovered GeneMark_model.109711_t, internal, 693, 749
-recovered GeneMark_model.109711_t, internal, 1382, 1501
-recovered GeneMark_model.109711_t, internal, 1711, 1902
Valid prediction for snap_scaffold_1771-snap.1-T1
add_exon() Sorry, snap_scaffold_1771-snap.1-T1 1675-1927-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1960
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support