-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1767

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 326, 406
Sorry, prediction GeneMark_model.109709_t fails validation.
(AGG)	 AG	326-406	GT	GGG
(GAG)	 AG	722-745	GC	AGG
(AGG)	 AG	769-882	GT	AGG
(GAG)	 AG	903-932	GT	AAG
(GGA)	 AG	958-969	GT	AGG
(AAG)	 AG	994-1000	GT	TGG
(GAG)	 AG	1094-1143	GT	AGG
(ATG)	 AG	1171-1174	GA	GAG
-recovered GeneMark_model.109709_t, terminal, 958, 969
-recovered GeneMark_model.109709_t, terminal, 1171, 1174
-recovered GeneMark_model.109709_t, internal, 326, 406
-recovered GeneMark_model.109709_t, internal, 722, 745
-recovered GeneMark_model.109709_t, internal, 769, 882
-recovered GeneMark_model.109709_t, internal, 903, 932
-recovered GeneMark_model.109709_t, internal, 958, 969
-recovered GeneMark_model.109709_t, internal, 994, 1000
-recovered GeneMark_model.109709_t, internal, 1094, 1143
Valid prediction for snap_scaffold_1767-snap.1-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_62814-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1963
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support