-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1766

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 239, 307
Couldn't classify 1218, 1370
Sorry, prediction snap_scaffold_1766-snap.2-T1 fails validation.
(AGC)	 AG	239-307	GT	ATG
(GTA)	 AG	1218-1370	GT	GGG
-recovered snap_scaffold_1766-snap.2-T1, internal, 239, 307
-recovered snap_scaffold_1766-snap.2-T1, internal, 1218, 1370
Valid prediction for GlimmerHMM_glimmerT_62813-T1
Couldn't classify 239, 307
Sorry, prediction Augustus_model.g41816.t1 fails validation.
(AGC)	 AG	239-307	GT	ATG
(GTA)	 AG	1218-1427	AG	GAA
-recovered Augustus_model.g41816.t1, terminal, 1218, 1427
-recovered Augustus_model.g41816.t1, internal, 239, 307

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 165, 279
Couldn't classify 446, 764
Sorry, prediction GeneMark_model.109708_t fails validation.
(AGA)	 AG	165-279	GT	AGG
(AGG)	 AG	306-341	GT	AGG
(GAG)	 AG	368-415	GT	AGG
(GAG)	 AG	446-764	GT	AGG
-recovered GeneMark_model.109708_t, internal, 165, 279
-recovered GeneMark_model.109708_t, internal, 306, 341
-recovered GeneMark_model.109708_t, internal, 368, 415
-recovered GeneMark_model.109708_t, internal, 446, 764
Couldn't classify 165, 279
Couldn't classify 1723, 1752
Sorry, prediction snap_scaffold_1766-snap.1-T1 fails validation.
(AGA)	 AG	165-279	GT	AGG
(AGG)	 AG	548-764	GT	AGG
(GCT)	 AG	1723-1752	GT	AGG
-recovered snap_scaffold_1766-snap.1-T1, internal, 165, 279
-recovered snap_scaffold_1766-snap.1-T1, internal, 548, 764
-recovered snap_scaffold_1766-snap.1-T1, internal, 1723, 1752

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1799, rend_intergenic: 239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1963
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1799, rend_intergenic: 239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support