-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1764

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 113, 216
Sorry, prediction Augustus_model.g41814.t1 fails validation.
(ATC)	 AG	113-216	GT	ATG
(CCG)	 AG	485-604	GT	GTG
(ACA)	 AG	951-968	GT	AGG
(GCA)	 AG	1639-1715	AA	GAA
-recovered Augustus_model.g41814.t1, terminal, 1639, 1715
-recovered Augustus_model.g41814.t1, internal, 113, 216
-recovered Augustus_model.g41814.t1, internal, 485, 604
-recovered Augustus_model.g41814.t1, internal, 951, 968
Couldn't classify 113, 216
Sorry, prediction snap_scaffold_1764-snap.1-T1 fails validation.
(ATC)	 AG	113-216	GT	ATG
(CCG)	 AG	485-600	GT	AGG
(GCA)	 AG	1639-1732	GT	AGG
(CCA)	 AG	1761-1840	GA	GAG
-recovered snap_scaffold_1764-snap.1-T1, terminal, 1761, 1840
-recovered snap_scaffold_1764-snap.1-T1, internal, 113, 216
-recovered snap_scaffold_1764-snap.1-T1, internal, 485, 600
-recovered snap_scaffold_1764-snap.1-T1, internal, 1639, 1732

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62812-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62812-T1 221-474-terminal-1 is invalid.
Couldn't classify 1592, 1639
Sorry, prediction GeneMark_model.109706_t fails validation.
(ATG)	 GG	310-320	GT	ATG
(GAG)	 AG	365-490	GT	GAG
(GAG)	 AG	523-555	GT	AGG
(AGG)	 AG	581-664	GT	GGG
(ACC)	 AG	1481-1564	GT	GGG
(GAG)	 AG	1592-1639	GT	GGG
-recovered GeneMark_model.109706_t, initial, 310, 320
-recovered GeneMark_model.109706_t, internal, 365, 490
-recovered GeneMark_model.109706_t, internal, 523, 555
-recovered GeneMark_model.109706_t, internal, 581, 664
-recovered GeneMark_model.109706_t, internal, 1481, 1564
-recovered GeneMark_model.109706_t, internal, 1592, 1639
Valid prediction for GlimmerHMM_glimmerT_62811-T1
Valid prediction for snap_scaffold_1764-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1840, rend_intergenic: 120  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1969
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1840, rend_intergenic: 120  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support