-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1763

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1195, 1266
Couldn't classify 1477, 1621
Sorry, prediction GeneMark_model.109705_t fails validation.
(AAG)	 AG	1195-1266	GT	GAG
(GAG)	 AG	1293-1304	GT	GAG
(AGG)	 AG	1332-1388	GT	GGG
(TCG)	 AG	1477-1621	GT	ATG
-recovered GeneMark_model.109705_t, internal, 1195, 1266
-recovered GeneMark_model.109705_t, internal, 1293, 1304
-recovered GeneMark_model.109705_t, internal, 1332, 1388
-recovered GeneMark_model.109705_t, internal, 1477, 1621
Couldn't classify 115, 354
Sorry, prediction snap_scaffold_1763-snap.1-T1 fails validation.
(GAC)	 AG	115-354	GT	TGG
(GGG)	 AG	1203-1663	CA	AAC
-recovered snap_scaffold_1763-snap.1-T1, terminal, 1203, 1663
-recovered snap_scaffold_1763-snap.1-T1, internal, 115, 354

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 83, 182
Couldn't classify 1440, 1541
Sorry, prediction snap_scaffold_1763-snap.2-T1 fails validation.
(TCG)	 AG	83-182	GT	AGG
(TCT)	 AG	1440-1541	GT	CAG
-recovered snap_scaffold_1763-snap.2-T1, internal, 83, 182
-recovered snap_scaffold_1763-snap.2-T1, internal, 1440, 1541

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1663, rend_intergenic: 429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1969
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1663, rend_intergenic: 429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support