-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1762

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 609, 701
Sorry, prediction GeneMark_model.109704_t fails validation.
(GGG)	 AG	609-701	GT	GGG
(AGA)	 AG	842-904	GT	GAG
(AGA)	 AG	952-1038	GT	GAG
(GGA)	 AG	1100-1123	GT	GAG
(AGA)	 AG	1185-1199	GT	CTG
(GCT)	 AG	1271-1277	AG	AAA
-recovered GeneMark_model.109704_t, terminal, 1271, 1277
-recovered GeneMark_model.109704_t, internal, 609, 701
-recovered GeneMark_model.109704_t, internal, 842, 904
-recovered GeneMark_model.109704_t, internal, 952, 1038
-recovered GeneMark_model.109704_t, internal, 1100, 1123
-recovered GeneMark_model.109704_t, internal, 1185, 1199

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62810-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62810-T1 1188-1545-terminal-1 is invalid.
Couldn't classify 1188, 1469
Sorry, prediction snap_scaffold_1762-snap.1-T1 fails validation.
(CGA)	 AG	1188-1469	GT	TGG
-recovered snap_scaffold_1762-snap.1-T1, internal, 1188, 1469
Valid prediction for Augustus_model.g41813.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1970
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support