-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1760

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 43, 51
Couldn't classify 1734, 1742
Sorry, prediction GeneMark_model.109703_t fails validation.
(GGT)	 AG	43-51	GT	GCG
(AAA)	 AG	1100-1120	GT	GAG
(AAA)	 AG	1162-1182	GT	GAG
(AGA)	 AG	1208-1231	GT	GAG
(GGA)	 AG	1269-1349	GT	ATG
(AGA)	 AG	1379-1411	GT	ATG
(AAA)	 AG	1436-1474	GT	GTG
(AAA)	 AG	1498-1536	GT	GTG
(AGA)	 AG	1567-1599	GT	ATG
(AGA)	 AG	1630-1656	GT	GAG
(GGA)	 AG	1678-1713	GT	AGG
(TGA)	 AG	1734-1742	GT	GTG
-recovered GeneMark_model.109703_t, internal, 43, 51
-recovered GeneMark_model.109703_t, internal, 1100, 1120
-recovered GeneMark_model.109703_t, internal, 1162, 1182
-recovered GeneMark_model.109703_t, internal, 1208, 1231
-recovered GeneMark_model.109703_t, internal, 1269, 1349
-recovered GeneMark_model.109703_t, internal, 1379, 1411
-recovered GeneMark_model.109703_t, internal, 1436, 1474
-recovered GeneMark_model.109703_t, internal, 1498, 1536
-recovered GeneMark_model.109703_t, internal, 1567, 1599
-recovered GeneMark_model.109703_t, internal, 1630, 1656
-recovered GeneMark_model.109703_t, internal, 1678, 1713
-recovered GeneMark_model.109703_t, internal, 1734, 1742

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1973
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support