-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1758

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62809-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 155, 181
Couldn't classify 1906, 1929
Sorry, prediction GeneMark_model.109701_t fails validation.
(ACA)	 AG	155-181	GT	AGG
(ACA)	 AG	203-229	GT	AGG
(ACA)	 AG	251-277	GT	AGG
(GAG)	 AG	323-373	GT	AGG
(GCG)	 AG	422-469	GT	AGG
(AGA)	 AG	617-688	GT	AGG
(ACA)	 AG	1555-1569	GT	TGG
(GAT)	 AG	1598-1621	GT	TGG
(GAT)	 AG	1650-1715	GT	TGG
(GAT)	 AG	1744-1767	GT	TGG
(TAG)	 AG	1849-1875	GT	TGG
(GAT)	 AG	1906-1929	GT	TGG
-recovered GeneMark_model.109701_t, internal, 155, 181
-recovered GeneMark_model.109701_t, internal, 203, 229
-recovered GeneMark_model.109701_t, internal, 251, 277
-recovered GeneMark_model.109701_t, internal, 323, 373
-recovered GeneMark_model.109701_t, internal, 422, 469
-recovered GeneMark_model.109701_t, internal, 617, 688
-recovered GeneMark_model.109701_t, internal, 1555, 1569
-recovered GeneMark_model.109701_t, internal, 1598, 1621
-recovered GeneMark_model.109701_t, internal, 1650, 1715
-recovered GeneMark_model.109701_t, internal, 1744, 1767
-recovered GeneMark_model.109701_t, internal, 1849, 1875
-recovered GeneMark_model.109701_t, internal, 1906, 1929

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1976
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support