-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1756

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 629, 723
Couldn't classify 1799, 1882
Sorry, prediction snap_scaffold_1756-snap.1-T1 fails validation.
(GGA)	 AG	629-723	GT	GGG
(GAC)	 AG	1316-1414	GT	TGG
(AGC)	 AG	1799-1882	GT	CGG
-recovered snap_scaffold_1756-snap.1-T1, internal, 629, 723
-recovered snap_scaffold_1756-snap.1-T1, internal, 1316, 1414
-recovered snap_scaffold_1756-snap.1-T1, internal, 1799, 1882
Couldn't classify 34, 69
Couldn't classify 1938, 1970
Sorry, prediction GeneMark_model.109699_t fails validation.
(AGA)	 AG	34-69	GT	AAG
(AGA)	 AG	156-176	GT	GAG
(ACA)	 AG	202-467	GT	GGG
(GGA)	 AG	629-725	GT	GTG
(AGA)	 AG	1446-1625	GC	CGG
(ACA)	 AG	1650-1667	GT	AAG
(GGG)	 AG	1855-1896	GT	GGG
(GCA)	 AG	1938-1970	GC	AGG
-recovered GeneMark_model.109699_t, terminal, 1650, 1667
-recovered GeneMark_model.109699_t, internal, 34, 69
-recovered GeneMark_model.109699_t, internal, 156, 176
-recovered GeneMark_model.109699_t, internal, 202, 467
-recovered GeneMark_model.109699_t, internal, 629, 725
-recovered GeneMark_model.109699_t, internal, 1446, 1625
-recovered GeneMark_model.109699_t, internal, 1650, 1667
-recovered GeneMark_model.109699_t, internal, 1855, 1896
-recovered GeneMark_model.109699_t, internal, 1938, 1970

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1981
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support