-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1755

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62808-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62808-T1 178-670-terminal-1 is invalid.
Couldn't classify 138, 151
Couldn't classify 1055, 1126
Sorry, prediction GeneMark_model.109698_t fails validation.
(CCC)	 AG	138-151	GT	AGG
(GGG)	 AG	178-191	GT	CTG
(GGA)	 AG	278-283	GC	AGG
(GCA)	 AG	306-320	GT	CAG
(AGG)	 AG	349-507	GC	AGG
(GCA)	 AG	531-608	GT	CAG
(ACC)	 AG	635-647	GT	TAG
(GGA)	 AG	677-687	GT	AGG
(GAG)	 AG	1055-1126	GT	GGG
-recovered GeneMark_model.109698_t, internal, 138, 151
-recovered GeneMark_model.109698_t, internal, 178, 191
-recovered GeneMark_model.109698_t, internal, 278, 283
-recovered GeneMark_model.109698_t, internal, 306, 320
-recovered GeneMark_model.109698_t, internal, 349, 507
-recovered GeneMark_model.109698_t, internal, 531, 608
-recovered GeneMark_model.109698_t, internal, 635, 647
-recovered GeneMark_model.109698_t, internal, 677, 687
-recovered GeneMark_model.109698_t, internal, 1055, 1126
Couldn't classify 178, 666
Sorry, prediction snap_scaffold_1755-snap.1-T1 fails validation.
(GGG)	 AG	178-666	GT	CCG
(TAC)	 AG	1272-1326	AG	AGA
-recovered snap_scaffold_1755-snap.1-T1, terminal, 1272, 1326
-recovered snap_scaffold_1755-snap.1-T1, internal, 178, 666

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1981
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support