-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1752

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 361, 402
Sorry, prediction GeneMark_model.109696_t fails validation.
(GGG)	 AG	361-402	GT	GTG
(AGG)	 AG	618-687	GT	CGG
(TCC)	 AG	798-901	GT	TTG
(AGA)	 AG	937-999	GT	CAG
(AGA)	 AG	1024-1065	GT	GAG
(ACA)	 AG	1089-1130	GT	AGG
(GCA)	 AG	1153-1261	TG	AGT
-recovered GeneMark_model.109696_t, terminal, 1153, 1261
-recovered GeneMark_model.109696_t, internal, 361, 402
-recovered GeneMark_model.109696_t, internal, 618, 687
-recovered GeneMark_model.109696_t, internal, 798, 901
-recovered GeneMark_model.109696_t, internal, 937, 999
-recovered GeneMark_model.109696_t, internal, 1024, 1065
-recovered GeneMark_model.109696_t, internal, 1089, 1130

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 86, 211
Sorry, prediction GeneMark_model.109697_t fails validation.
(CTG)	 AG	86-211	GT	ACG
(ACA)	 AG	370-427	CA	GAC
-recovered GeneMark_model.109697_t, terminal, 370, 427
-recovered GeneMark_model.109697_t, internal, 86, 211
Valid prediction for GlimmerHMM_glimmerT_62807-T1
Couldn't classify 1139, 1240
Sorry, prediction snap_scaffold_1752-snap.1-T1 fails validation.
(ATG)	 AC	37-123	GT	CAG
(CCG)	 AG	1139-1240	GT	TGG
-recovered snap_scaffold_1752-snap.1-T1, initial, 37, 123
-recovered snap_scaffold_1752-snap.1-T1, internal, 1139, 1240

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1983
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support