-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1751

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109694_t
Couldn't classify 687, 741
Couldn't classify 1358, 1453
Sorry, prediction snap_scaffold_1751-snap.1-T1 fails validation.
(TTC)	 AG	687-741	GT	ACG
(CCG)	 AG	878-1186	GT	GAG
(CCC)	 AG	1358-1453	GT	GTG
-recovered snap_scaffold_1751-snap.1-T1, internal, 687, 741
-recovered snap_scaffold_1751-snap.1-T1, internal, 878, 1186
-recovered snap_scaffold_1751-snap.1-T1, internal, 1358, 1453
Valid prediction for Augustus_model.g41812.t1
Valid prediction for GlimmerHMM_glimmerT_62806-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1702, 1971
Sorry, prediction GeneMark_model.109693_t fails validation.
(ATG)	 GA	1614-1642	GT	ATG
(AGG)	 AG	1702-1971	GT	ACG
-recovered GeneMark_model.109693_t, initial, 1614, 1642
-recovered GeneMark_model.109693_t, internal, 1702, 1971
Couldn't classify 19, 136
Sorry, prediction GeneMark_model.109695_t fails validation.
(CCT)	 AG	19-136	GT	CTG
(GAA)	 AG	362-415	GT	AGG
(ACT)	 AG	452-481	GT	AAG
(ATG)	 AG	623-644	GG	AAG
-recovered GeneMark_model.109695_t, terminal, 623, 644
-recovered GeneMark_model.109695_t, internal, 19, 136
-recovered GeneMark_model.109695_t, internal, 362, 415
-recovered GeneMark_model.109695_t, internal, 452, 481

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1984
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support