-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_175

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_175-snap.1-T1
Couldn't classify 1973, 2011
Sorry, prediction GeneMark_model.106827_t fails validation.
(TGG)	 AG	1973-2011	GT	GAG
(GAA)	 AG	2033-2044	GT	AGG
(GGA)	 AG	2073-2243	GT	AGG
(GGA)	 AG	2281-2367	GT	AGG
(GGG)	 AG	2457-2514	GG	GAG
-recovered GeneMark_model.106827_t, terminal, 1973, 2011
-recovered GeneMark_model.106827_t, terminal, 2457, 2514
-recovered GeneMark_model.106827_t, internal, 1973, 2011
-recovered GeneMark_model.106827_t, internal, 2033, 2044
-recovered GeneMark_model.106827_t, internal, 2073, 2243
-recovered GeneMark_model.106827_t, internal, 2281, 2367

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_19588.p1
Valid prediction for snap_scaffold_175-snap.3-T1
Valid prediction for GeneMark_model.106828_t
Valid prediction for snap_scaffold_175-snap.2-T1
Valid prediction for Augustus_model.g40870.t1
Couldn't classify 2510, 2711
Sorry, prediction GlimmerHMM_glimmerT_61453-T1 fails validation.
(GAG)	 AG	2510-2711	GT	AGG
(CAG)	 AG	3157-3718	GT	CAG
(AGA)	 AG	3799-3977	GT	GCG
(GAT)	 AG	4704-4939	GT	CAG
(ACC)	 AG	9848-10037	CG	AGC
-recovered GlimmerHMM_glimmerT_61453-T1, terminal, 9848, 10037
-recovered GlimmerHMM_glimmerT_61453-T1, internal, 2510, 2711
-recovered GlimmerHMM_glimmerT_61453-T1, internal, 3157, 3718
-recovered GlimmerHMM_glimmerT_61453-T1, internal, 3799, 3977
-recovered GlimmerHMM_glimmerT_61453-T1, internal, 4704, 4939

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2379, rend_intergenic: 858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10802
-exon list size: 46


building trellis

2.1    
4.2    
6.2    
8.3    
10.4    
12.5    
14.6    
16.7    
18.8    
20.8    
22.9    
25.0    
27.1    
29.2    
31.2    
33.3    
35.4    
37.5    
39.6    
41.7    
43.8    
45.8    
47.9    
50.0    
52.1    
54.2    
56.2    
58.3    
60.4    
62.5    
64.6    
66.7    
68.8    
70.8    
72.9    
75.0    
77.1    
79.2    
81.2    
83.3    
85.4    
87.5    
89.6    
91.7    
93.8    
95.8    
97.9    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 2379, rend_intergenic: 858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support