-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1748

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1860, 1899
Sorry, prediction GeneMark_model.109690_t fails validation.
(ATG)	 GT	1587-1693	GT	CTG
(AGG)	 AG	1816-1839	GT	AGG
(AGA)	 AG	1860-1899	GT	AGG
-recovered GeneMark_model.109690_t, initial, 1587, 1693
-recovered GeneMark_model.109690_t, internal, 1816, 1839
-recovered GeneMark_model.109690_t, internal, 1860, 1899

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1699, 1732
Sorry, prediction GeneMark_model.109689_t fails validation.
(ATG)	 GT	574-581	GT	ATG
(GGG)	 AG	1222-1281	GT	GGG
(AAG)	 AG	1311-1472	GT	ACG
(GGT)	 AG	1563-1649	GT	CGG
(GAG)	 AG	1699-1732	GT	AAG
-recovered GeneMark_model.109689_t, initial, 574, 581
-recovered GeneMark_model.109689_t, internal, 1222, 1281
-recovered GeneMark_model.109689_t, internal, 1311, 1472
-recovered GeneMark_model.109689_t, internal, 1563, 1649
-recovered GeneMark_model.109689_t, internal, 1699, 1732

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1988
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support