-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1744

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1744-snap.1-T1
add_exon() Sorry, snap_scaffold_1744-snap.1-T1 666-1236-terminal-1 is invalid.
Couldn't classify 192, 253
Couldn't classify 666, 1213
Sorry, prediction GeneMark_model.109683_t fails validation.
(GCT)	 AG	192-253	GT	TGG
(TGC)	 AG	425-534	GT	CCG
(AGA)	 AG	666-1213	GT	CAG
-recovered GeneMark_model.109683_t, internal, 192, 253
-recovered GeneMark_model.109683_t, internal, 425, 534
-recovered GeneMark_model.109683_t, internal, 666, 1213
Valid prediction for GlimmerHMM_glimmerT_62801-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62801-T1 666-1236-terminal-1 is invalid.
Couldn't classify 425, 479
Sorry, prediction Augustus_model.g41809.t1 fails validation.
(TGC)	 AG	425-479	GT	GGG
(GTC)	 AG	587-1236	GA	GAG
-recovered Augustus_model.g41809.t1, terminal, 587, 1236
-recovered Augustus_model.g41809.t1, internal, 425, 479

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support