-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1740

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1884, 1913
Sorry, prediction GeneMark_model.109680_t fails validation.
(ATG)	 TG	1628-1686	GT	GAG
(GCA)	 AG	1720-1740	GT	GGG
(GAG)	 AG	1765-1818	GT	AGG
(TGG)	 AG	1841-1858	GT	GGG
(GGG)	 AG	1884-1913	GT	GGG
-recovered GeneMark_model.109680_t, initial, 1628, 1686
-recovered GeneMark_model.109680_t, internal, 1720, 1740
-recovered GeneMark_model.109680_t, internal, 1765, 1818
-recovered GeneMark_model.109680_t, internal, 1841, 1858
-recovered GeneMark_model.109680_t, internal, 1884, 1913
Couldn't classify 1585, 1900
Sorry, prediction snap_scaffold_1740-snap.1-T1 fails validation.
(ATG)	 GG	939-1013	GT	AGG
(ATG)	 AG	1585-1900	GT	GGG
-recovered snap_scaffold_1740-snap.1-T1, initial, 939, 1013
-recovered snap_scaffold_1740-snap.1-T1, initial, 1585, 1900
-recovered snap_scaffold_1740-snap.1-T1, internal, 1585, 1900

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support