-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1737

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1324, 1437
Couldn't classify 1543, 1624
Sorry, prediction snap_scaffold_1737-snap.1-T1 fails validation.
(GTT)	 AG	1324-1437	GT	AAG
(GGC)	 AG	1543-1624	GT	TGG
-recovered snap_scaffold_1737-snap.1-T1, internal, 1324, 1437
-recovered snap_scaffold_1737-snap.1-T1, internal, 1543, 1624
Couldn't classify 358, 363
Sorry, prediction GeneMark_model.109678_t fails validation.
(GAG)	 AG	358-363	GT	GAG
(AGA)	 AG	386-394	GT	GAG
(AGG)	 AG	419-680	AG	AGA
-recovered GeneMark_model.109678_t, terminal, 419, 680
-recovered GeneMark_model.109678_t, internal, 358, 363
-recovered GeneMark_model.109678_t, internal, 386, 394
Couldn't classify 1543, 1624
Sorry, prediction GlimmerHMM_glimmerT_62799-T1 fails validation.
(ATG)	 AC	1355-1437	GT	AAG
(GGC)	 AG	1543-1624	GT	TGG
-recovered GlimmerHMM_glimmerT_62799-T1, initial, 1355, 1437
-recovered GlimmerHMM_glimmerT_62799-T1, internal, 1543, 1624
Couldn't classify 1324, 1437
Couldn't classify 1543, 1624
Sorry, prediction Augustus_model.g41806.t1 fails validation.
(GTT)	 AG	1324-1437	GT	AAG
(GGC)	 AG	1543-1624	GT	TGG
-recovered Augustus_model.g41806.t1, internal, 1324, 1437
-recovered Augustus_model.g41806.t1, internal, 1543, 1624

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support