-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1733

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 446, 543
Sorry, prediction GeneMark_model.109674_t fails validation.
(GCC)	 AG	446-543	GT	AGG
(GCT)	 AG	805-931	GT	ACG
(CTA)	 AG	1035-1048	GA	GAG
-recovered GeneMark_model.109674_t, terminal, 1035, 1048
-recovered GeneMark_model.109674_t, internal, 446, 543
-recovered GeneMark_model.109674_t, internal, 805, 931
Couldn't classify 446, 543
Couldn't classify 1389, 1521
Sorry, prediction snap_scaffold_1733-snap.1-T1 fails validation.
(GCC)	 AG	446-543	GT	AGG
(GCT)	 AG	805-931	GT	ACG
(CCA)	 AG	1389-1521	GT	CTG
-recovered snap_scaffold_1733-snap.1-T1, internal, 446, 543
-recovered snap_scaffold_1733-snap.1-T1, internal, 805, 931
-recovered snap_scaffold_1733-snap.1-T1, internal, 1389, 1521
Couldn't classify 446, 543
Sorry, prediction Augustus_model.g41805.t1 fails validation.
(GCC)	 AG	446-543	GT	AGG
(GCT)	 AG	805-931	GT	ACG
(CCA)	 AG	1389-1525	GT	AGG
-recovered Augustus_model.g41805.t1, terminal, 1389, 1525
-recovered Augustus_model.g41805.t1, internal, 446, 543
-recovered Augustus_model.g41805.t1, internal, 805, 931
-recovered Augustus_model.g41805.t1, internal, 1389, 1525
Couldn't classify 1389, 1521
Sorry, prediction GlimmerHMM_glimmerT_62798-T1 fails validation.
(ATG)	 AG	466-543	GT	AGG
(GCT)	 AG	805-931	GT	ACG
(CCA)	 AG	1389-1521	GT	CTG
-recovered GlimmerHMM_glimmerT_62798-T1, initial, 466, 543
-recovered GlimmerHMM_glimmerT_62798-T1, internal, 466, 543
-recovered GlimmerHMM_glimmerT_62798-T1, internal, 805, 931
-recovered GlimmerHMM_glimmerT_62798-T1, internal, 1389, 1521

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9, 131
Sorry, prediction GeneMark_model.109675_t fails validation.
(AGG)	 AG	9-131	GT	GAG
(ACA)	 AG	164-214	GT	CTG
(AGA)	 AG	665-683	AG	AAA
-recovered GeneMark_model.109675_t, terminal, 665, 683
-recovered GeneMark_model.109675_t, internal, 9, 131
-recovered GeneMark_model.109675_t, internal, 164, 214

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support