-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1732

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 357, 616
Sorry, prediction snap_scaffold_1732-snap.1-T1 fails validation.
(GAG)	 AG	357-616	GT	CCG
(GAT)	 AG	664-739	GT	ACG
(ATG)	 AG	908-1027	GT	AGG
(GCT)	 AG	1555-1582	CG	AAC
add_exon() Sorry, snap_scaffold_1732-snap.1-T1 908-1027-initial-1 is invalid.
-recovered snap_scaffold_1732-snap.1-T1, initial, 908, 1027
-recovered snap_scaffold_1732-snap.1-T1, terminal, 1555, 1582
-recovered snap_scaffold_1732-snap.1-T1, internal, 357, 616
-recovered snap_scaffold_1732-snap.1-T1, internal, 664, 739
-recovered snap_scaffold_1732-snap.1-T1, internal, 908, 1027
Couldn't classify 1005, 1027
Sorry, prediction GeneMark_model.109673_t fails validation.
(ATG)	 CT	333-337	GT	GAG
(GAG)	 AG	387-624	GT	CTG
(ATG)	 AG	908-915	GT	GAG
(AGC)	 AG	946-954	GT	CAG
(GAG)	 AG	1005-1027	GT	AGG
-recovered GeneMark_model.109673_t, initial, 333, 337
-recovered GeneMark_model.109673_t, initial, 908, 915
-recovered GeneMark_model.109673_t, internal, 387, 624
-recovered GeneMark_model.109673_t, internal, 908, 915
-recovered GeneMark_model.109673_t, internal, 946, 954
-recovered GeneMark_model.109673_t, internal, 1005, 1027

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1933, 1960
Sorry, prediction GeneMark_model.109672_t fails validation.
(ATG)	 GG	1818-1914	GT	AGG
(AGG)	 AG	1933-1960	GT	TGG
-recovered GeneMark_model.109672_t, initial, 1818, 1914
-recovered GeneMark_model.109672_t, internal, 1933, 1960

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support