-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1731

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62797-T1
Valid prediction for Augustus_model.g41804.t1
Valid prediction for snap_scaffold_1731-snap.1-T1
Couldn't classify 1216, 1260
Sorry, prediction GeneMark_model.109671_t fails validation.
(ATG)	 CT	207-431	GT	TGG
(ATC)	 AG	670-1185	GT	AGG
(ACC)	 AG	1216-1260	GT	AGG
-recovered GeneMark_model.109671_t, initial, 207, 431
-recovered GeneMark_model.109671_t, internal, 670, 1185
-recovered GeneMark_model.109671_t, internal, 1216, 1260

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support