-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1730

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1917, 1979
Sorry, prediction GeneMark_model.109670_t fails validation.
(ATG)	 AC	1358-1413	GT	GGG
(AGA)	 AG	1443-1484	GT	AAG
(AGA)	 AG	1579-1629	GC	GCG
(AGA)	 AG	1844-1894	GT	AGG
(CAG)	 AG	1917-1979	GT	AGG
-recovered GeneMark_model.109670_t, initial, 1358, 1413
add_exon() Sorry, GeneMark_model.109670_t 1443-1484-terminal-1 is invalid.
-recovered GeneMark_model.109670_t, terminal, 1443, 1484
-recovered GeneMark_model.109670_t, internal, 1443, 1484
-recovered GeneMark_model.109670_t, internal, 1579, 1629
-recovered GeneMark_model.109670_t, internal, 1844, 1894
-recovered GeneMark_model.109670_t, internal, 1917, 1979

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support