-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1729

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 798, 812
Couldn't classify 1530, 1544
Sorry, prediction GeneMark_model.109669_t fails validation.
(AAA)	 AG	798-812	GT	GAG
(AAA)	 AG	856-1011	GT	GAG
(AGA)	 AG	1035-1055	GT	AGG
(GAG)	 AG	1530-1544	GT	GGG
-recovered GeneMark_model.109669_t, internal, 798, 812
-recovered GeneMark_model.109669_t, internal, 856, 1011
-recovered GeneMark_model.109669_t, internal, 1035, 1055
-recovered GeneMark_model.109669_t, internal, 1530, 1544

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1729-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support