-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1728

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 600, 608
Sorry, prediction GeneMark_model.109668_t fails validation.
(GAC)	 AG	600-608	GT	GGG
(CCC)	 AG	961-1062	GT	AGG
(GGT)	 AG	1102-1168	GT	GAG
add_exon() Sorry, GeneMark_model.109668_t 961-1062-terminal-1 is invalid.
-recovered GeneMark_model.109668_t, terminal, 961, 1062
-recovered GeneMark_model.109668_t, terminal, 1102, 1168
-recovered GeneMark_model.109668_t, internal, 600, 608
-recovered GeneMark_model.109668_t, internal, 961, 1062
-recovered GeneMark_model.109668_t, internal, 1102, 1168

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support