-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1727

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1183, 1284
Sorry, prediction GeneMark_model.109667_t fails validation.
(ATG)	 GG	1080-1102	GT	GCG
(GAT)	 AG	1130-1156	GT	GGG
(GGG)	 AG	1183-1284	GT	TCG
-recovered GeneMark_model.109667_t, initial, 1080, 1102
-recovered GeneMark_model.109667_t, internal, 1130, 1156
-recovered GeneMark_model.109667_t, internal, 1183, 1284

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1294, 1457
Couldn't classify 1800, 1947
Sorry, prediction pasa_asmbl_19584.p1 fails validation.
(AGA)	 TT	1294-1457	GT	TGG
(GTT)	 AG	1800-1947	GT	TGG
-recovered pasa_asmbl_19584.p1, internal, 1800, 1947
Valid prediction for GlimmerHMM_glimmerT_62796-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62796-T1 1296-1461-terminal-1 is invalid.
Couldn't classify 1296, 1457
Couldn't classify 1800, 1947
Sorry, prediction snap_scaffold_1727-snap.1-T1 fails validation.
(ATA)	 AG	1296-1457	GT	TGG
(GTT)	 AG	1800-1947	GT	TGG
-recovered snap_scaffold_1727-snap.1-T1, internal, 1296, 1457
-recovered snap_scaffold_1727-snap.1-T1, internal, 1800, 1947
Couldn't classify 1800, 1947
Sorry, prediction GeneMark_model.109666_t fails validation.
(ATG)	 AG	970-1007	GT	GTG
(ATA)	 AG	1296-1457	GT	TGG
(GTT)	 AG	1800-1947	GT	TGG
-recovered GeneMark_model.109666_t, initial, 970, 1007
-recovered GeneMark_model.109666_t, internal, 970, 1007
-recovered GeneMark_model.109666_t, internal, 1296, 1457
-recovered GeneMark_model.109666_t, internal, 1800, 1947
Couldn't classify 1800, 1947
Sorry, prediction Augustus_model.g41803.t1 fails validation.
(ATG)	 AG	970-1016	GT	GTG
(ATA)	 AG	1296-1457	GT	TGG
(GTT)	 AG	1800-1947	GT	TGG
-recovered Augustus_model.g41803.t1, initial, 970, 1016
-recovered Augustus_model.g41803.t1, internal, 970, 1016
-recovered Augustus_model.g41803.t1, internal, 1296, 1457
-recovered Augustus_model.g41803.t1, internal, 1800, 1947

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support