-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1726

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1726-snap.2-T1
add_exon() Sorry, snap_scaffold_1726-snap.2-T1 1247-1529-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62795-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1074, 1587
Sorry, prediction snap_scaffold_1726-snap.1-T1 fails validation.
(ATG)	 GG	798-819	GT	AGG
(ATA)	 AG	945-1053	GT	AGG
(GAC)	 AG	1074-1587	GT	AGG
-recovered snap_scaffold_1726-snap.1-T1, initial, 798, 819
-recovered snap_scaffold_1726-snap.1-T1, internal, 945, 1053
-recovered snap_scaffold_1726-snap.1-T1, internal, 1074, 1587
Couldn't classify 15, 136
Couldn't classify 1285, 1587
Sorry, prediction GeneMark_model.109665_t fails validation.
(GGC)	 AG	15-136	GT	TGG
(CTG)	 AG	630-729	GT	TGG
(GAA)	 AG	814-819	GT	AGG
(GAG)	 AG	872-904	GT	GAG
(GAG)	 AG	991-1053	GT	AGG
(AGG)	 AG	1105-1263	GC	GAG
(GGG)	 AG	1285-1587	GT	AGG
-recovered GeneMark_model.109665_t, terminal, 872, 904
-recovered GeneMark_model.109665_t, internal, 15, 136
-recovered GeneMark_model.109665_t, internal, 630, 729
-recovered GeneMark_model.109665_t, internal, 814, 819
-recovered GeneMark_model.109665_t, internal, 872, 904
-recovered GeneMark_model.109665_t, internal, 991, 1053
-recovered GeneMark_model.109665_t, internal, 1105, 1263
-recovered GeneMark_model.109665_t, internal, 1285, 1587

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support