-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1724

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1724-snap.1-T1
Couldn't classify 11, 94
Sorry, prediction GeneMark_model.109662_t fails validation.
(GGC)	 AG	11-94	GT	AGG
(GGA)	 AG	121-187	TT	AGT
-recovered GeneMark_model.109662_t, terminal, 121, 187
-recovered GeneMark_model.109662_t, internal, 11, 94
Couldn't classify 1041, 1052
Sorry, prediction GeneMark_model.109663_t fails validation.
(ATG)	 GG	445-479	GT	GGG
(AGA)	 AG	515-535	GT	GGG
(GAA)	 AG	561-605	GC	GAG
(AGA)	 AG	653-658	GT	AGG
(AGA)	 AG	689-922	GC	GAG
(AGG)	 AG	946-1020	GT	GGG
(GAG)	 AG	1041-1052	GT	GGG
-recovered GeneMark_model.109663_t, initial, 445, 479
-recovered GeneMark_model.109663_t, internal, 515, 535
-recovered GeneMark_model.109663_t, internal, 561, 605
-recovered GeneMark_model.109663_t, internal, 653, 658
-recovered GeneMark_model.109663_t, internal, 689, 922
-recovered GeneMark_model.109663_t, internal, 946, 1020
-recovered GeneMark_model.109663_t, internal, 1041, 1052

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41802.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 23


building trellis

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8.0    
12.0    
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28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support