-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1723

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 615, 674
Sorry, prediction GeneMark_model.109660_t fails validation.
(TGA)	 AG	615-674	GT	GAG
(AGA)	 AG	714-734	GT	GCG
(GGA)	 AG	757-776	GT	AGG
(GCA)	 AG	897-1095	GT	GGG
(AGA)	 AG	1127-1174	GT	AGG
(GGA)	 AG	1195-1221	GC	GAG
(GTA)	 AG	1247-1250	AG	AGA
-recovered GeneMark_model.109660_t, terminal, 1247, 1250
-recovered GeneMark_model.109660_t, internal, 615, 674
-recovered GeneMark_model.109660_t, internal, 714, 734
-recovered GeneMark_model.109660_t, internal, 757, 776
-recovered GeneMark_model.109660_t, internal, 897, 1095
-recovered GeneMark_model.109660_t, internal, 1127, 1174
-recovered GeneMark_model.109660_t, internal, 1195, 1221

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62794-T1
Valid prediction for GeneMark_model.109661_t
Couldn't classify 416, 576
Couldn't classify 1012, 1112
Sorry, prediction Augustus_model.g41801.t1 fails validation.
(GAC)	 AG	416-576	GT	AGG
(CAT)	 AG	1012-1112	GT	AGG
-recovered Augustus_model.g41801.t1, internal, 416, 576
-recovered Augustus_model.g41801.t1, internal, 1012, 1112
Couldn't classify 416, 576
Couldn't classify 1012, 1112
Sorry, prediction snap_scaffold_1723-snap.1-T1 fails validation.
(GAC)	 AG	416-576	GT	AGG
(CAT)	 AG	1012-1112	GT	AGG
-recovered snap_scaffold_1723-snap.1-T1, internal, 416, 576
-recovered snap_scaffold_1723-snap.1-T1, internal, 1012, 1112

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2000
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support