-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1720

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 687, 698
Couldn't classify 1732, 1817
Sorry, prediction GeneMark_model.109658_t fails validation.
(TTC)	 AG	687-698	GT	CAG
(ATC)	 AG	860-978	GT	GGG
(ACG)	 AG	1295-1324	GT	ATG
(AGG)	 AG	1359-1367	GT	GGG
(AGA)	 AG	1388-1498	GT	CAG
(AGA)	 AG	1732-1817	GT	AGG
-recovered GeneMark_model.109658_t, internal, 687, 698
-recovered GeneMark_model.109658_t, internal, 860, 978
-recovered GeneMark_model.109658_t, internal, 1295, 1324
-recovered GeneMark_model.109658_t, internal, 1359, 1367
-recovered GeneMark_model.109658_t, internal, 1388, 1498
-recovered GeneMark_model.109658_t, internal, 1732, 1817

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2006
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support