-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1719

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41799.t1
add_exon() Sorry, Augustus_model.g41799.t1 238-458-terminal-1 is invalid.
Couldn't classify 16, 116
Sorry, prediction GeneMark_model.109656_t fails validation.
(GGT)	 AG	16-116	GT	CTG
(GGG)	 AG	238-458	AT	AGA
-recovered GeneMark_model.109656_t, terminal, 238, 458
-recovered GeneMark_model.109656_t, internal, 16, 116
Valid prediction for GlimmerHMM_glimmerT_62793-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62793-T1 238-458-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 34, 46
Sorry, prediction GeneMark_model.109657_t fails validation.
(AGA)	 AG	34-46	GT	GAG
(AAA)	 AG	70-78	GT	GAG
(AGA)	 AG	102-116	GT	GAG
(AGA)	 AG	144-158	GT	GAG
(AGA)	 AG	204-212	GT	GGG
(TGT)	 AG	252-290	GT	GAG
(AAA)	 AG	350-358	GT	GAG
(AAA)	 AG	380-394	GT	GGG
(GGA)	 AG	420-428	GT	GAG
(TGA)	 AG	464-472	GT	GAG
(TGA)	 AG	506-514	GT	GTG
(AGA)	 AG	538-546	GT	GTG
(TGA)	 AG	580-594	GT	GAG
(AGT)	 AG	630-662	GT	CAG
(GGA)	 AG	1098-1232	GT	GAG
(GAA)	 AG	1253-1261	GT	AGG
(ACT)	 AG	1284-1404	GT	AGG
(CAC)	 AG	1429-1437	TT	GAT
-recovered GeneMark_model.109657_t, terminal, 1429, 1437
-recovered GeneMark_model.109657_t, internal, 34, 46
-recovered GeneMark_model.109657_t, internal, 70, 78
-recovered GeneMark_model.109657_t, internal, 102, 116
-recovered GeneMark_model.109657_t, internal, 144, 158
-recovered GeneMark_model.109657_t, internal, 204, 212
-recovered GeneMark_model.109657_t, internal, 252, 290
-recovered GeneMark_model.109657_t, internal, 350, 358
-recovered GeneMark_model.109657_t, internal, 380, 394
-recovered GeneMark_model.109657_t, internal, 420, 428
-recovered GeneMark_model.109657_t, internal, 464, 472
-recovered GeneMark_model.109657_t, internal, 506, 514
-recovered GeneMark_model.109657_t, internal, 538, 546
-recovered GeneMark_model.109657_t, internal, 580, 594
-recovered GeneMark_model.109657_t, internal, 630, 662
-recovered GeneMark_model.109657_t, internal, 1098, 1232
-recovered GeneMark_model.109657_t, internal, 1253, 1261
-recovered GeneMark_model.109657_t, internal, 1284, 1404

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2007
-exon list size: 49


building trellis

2.0    
3.9    
5.9    
7.8    
9.8    
11.8    
13.7    
15.7    
17.6    
19.6    
21.6    
23.5    
25.5    
27.5    
29.4    
31.4    
33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
64.7    
66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support