-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1718

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109654_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109655_t
add_exon() Sorry, GeneMark_model.109655_t 195-367-terminal-1 is invalid.
Couldn't classify 195, 355
Couldn't classify 980, 1255
Sorry, prediction snap_scaffold_1718-snap.1-T1 fails validation.
(CCC)	 AG	195-355	GT	AGG
(ATC)	 AG	666-749	GT	GTG
(CCT)	 AG	980-1255	GT	AGG
-recovered snap_scaffold_1718-snap.1-T1, internal, 195, 355
-recovered snap_scaffold_1718-snap.1-T1, internal, 666, 749
-recovered snap_scaffold_1718-snap.1-T1, internal, 980, 1255
Valid prediction for GeneMark_model.109653_t
Valid prediction for GlimmerHMM_glimmerT_62791-T1
Couldn't classify 195, 355
Couldn't classify 1027, 1255
Sorry, prediction Augustus_model.g41798.t1 fails validation.
(CCC)	 AG	195-355	GT	AGG
(ATC)	 AG	666-769	GT	AGG
(CTA)	 AG	1027-1255	GT	AGG
-recovered Augustus_model.g41798.t1, internal, 195, 355
-recovered Augustus_model.g41798.t1, internal, 666, 769
-recovered Augustus_model.g41798.t1, internal, 1027, 1255
Couldn't classify 195, 355
Sorry, prediction GlimmerHMM_glimmerT_62792-T1 fails validation.
(CCC)	 AG	195-355	GT	AGG
(ATC)	 AG	666-776	CA	AAC
-recovered GlimmerHMM_glimmerT_62792-T1, terminal, 666, 776
-recovered GlimmerHMM_glimmerT_62792-T1, internal, 195, 355

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2008
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support