-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1716

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 572, 583
Sorry, prediction GeneMark_model.109651_t fails validation.
(ACA)	 AG	572-583	GT	AGG
(GGA)	 AG	628-714	GT	GAG
(AAA)	 AG	746-901	GT	GTG
(AGA)	 AG	1008-1065	AA	AGA
-recovered GeneMark_model.109651_t, terminal, 1008, 1065
-recovered GeneMark_model.109651_t, internal, 572, 583
-recovered GeneMark_model.109651_t, internal, 628, 714
-recovered GeneMark_model.109651_t, internal, 746, 901

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 193, 249
Sorry, prediction GlimmerHMM_glimmerT_62790-T1 fails validation.
(CGA)	 AG	193-249	GT	AGG
(GTA)	 AG	545-680	GA	AAG
-recovered GlimmerHMM_glimmerT_62790-T1, terminal, 545, 680
-recovered GlimmerHMM_glimmerT_62790-T1, internal, 193, 249
Couldn't classify 193, 249
Sorry, prediction GeneMark_model.109652_t fails validation.
(CGA)	 AG	193-249	GT	AGG
(CCC)	 AG	350-365	GT	TGG
(GTA)	 AG	545-836	GT	AAG
(GTA)	 AG	859-862	AG	AAA
-recovered GeneMark_model.109652_t, terminal, 859, 862
-recovered GeneMark_model.109652_t, internal, 193, 249
-recovered GeneMark_model.109652_t, internal, 350, 365
-recovered GeneMark_model.109652_t, internal, 545, 836
Couldn't classify 193, 249
Couldn't classify 545, 858
Sorry, prediction snap_scaffold_1716-snap.1-T1 fails validation.
(CGA)	 AG	193-249	GT	AGG
(GTA)	 AG	545-858	GT	AGG
-recovered snap_scaffold_1716-snap.1-T1, internal, 193, 249
-recovered snap_scaffold_1716-snap.1-T1, internal, 545, 858
Couldn't classify 193, 249
Sorry, prediction Augustus_model.g41797.t1 fails validation.
(CGA)	 AG	193-249	GT	AGG
(GTA)	 AG	545-858	GT	AGG
(GGT)	 AG	1753-1836	CT	AGC
-recovered Augustus_model.g41797.t1, terminal, 1753, 1836
-recovered Augustus_model.g41797.t1, internal, 193, 249
-recovered Augustus_model.g41797.t1, internal, 545, 858

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2011
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support