-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1715

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 33, 205
Couldn't classify 1728, 1740
Sorry, prediction GeneMark_model.109650_t fails validation.
(AAC)	 AG	33-205	GT	CTG
(AGA)	 AG	582-629	GT	CAG
(AGA)	 AG	1681-1701	GT	GGG
(AGG)	 AG	1728-1740	GT	GGG
-recovered GeneMark_model.109650_t, internal, 33, 205
-recovered GeneMark_model.109650_t, internal, 582, 629
-recovered GeneMark_model.109650_t, internal, 1681, 1701
-recovered GeneMark_model.109650_t, internal, 1728, 1740
Couldn't classify 541, 629
Sorry, prediction snap_scaffold_1715-snap.1-T1 fails validation.
(TTA)	 AG	541-629	GT	CAG
(GAC)	 AG	1644-1821	TG	GAT
-recovered snap_scaffold_1715-snap.1-T1, terminal, 1644, 1821
-recovered snap_scaffold_1715-snap.1-T1, internal, 541, 629

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2012
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support