-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1714

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1277, 1469
Sorry, prediction snap_scaffold_1714-snap.2-T1 fails validation.
(ATG)	 AC	895-934	GT	AAG
(AGC)	 AG	1277-1469	GT	AGG
-recovered snap_scaffold_1714-snap.2-T1, initial, 895, 934
-recovered snap_scaffold_1714-snap.2-T1, internal, 1277, 1469
Couldn't classify 1519, 1541
Sorry, prediction GeneMark_model.109649_t fails validation.
(ATG)	 TG	575-577	GT	TGG
(GAG)	 AG	637-686	GT	GAG
(GGG)	 AG	715-747	GT	TTG
(AGG)	 AG	797-869	GT	TCG
(GTG)	 AG	1234-1250	GT	AGG
(CTG)	 AG	1364-1381	GT	GGG
(AGA)	 AG	1408-1431	GT	AGG
(GGA)	 AG	1466-1498	GT	AGG
(GGA)	 AG	1519-1541	GT	CGG
-recovered GeneMark_model.109649_t, initial, 575, 577
-recovered GeneMark_model.109649_t, internal, 637, 686
-recovered GeneMark_model.109649_t, internal, 715, 747
-recovered GeneMark_model.109649_t, internal, 797, 869
-recovered GeneMark_model.109649_t, internal, 1234, 1250
-recovered GeneMark_model.109649_t, internal, 1364, 1381
-recovered GeneMark_model.109649_t, internal, 1408, 1431
-recovered GeneMark_model.109649_t, internal, 1466, 1498
-recovered GeneMark_model.109649_t, internal, 1519, 1541

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41796.t1
Couldn't classify 1367, 1559
Sorry, prediction snap_scaffold_1714-snap.1-T1 fails validation.
(CGT)	 AG	1367-1559	GT	CGG
-recovered snap_scaffold_1714-snap.1-T1, internal, 1367, 1559

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2012
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support