-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1713

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109647_t
Couldn't classify 317, 328
Sorry, prediction GeneMark_model.109646_t fails validation.
(GAA)	 AG	317-328	GT	GAG
(GAA)	 AG	353-400	GT	GAG
(AAG)	 AG	510-618	GG	GAG
-recovered GeneMark_model.109646_t, terminal, 510, 618
-recovered GeneMark_model.109646_t, internal, 317, 328
-recovered GeneMark_model.109646_t, internal, 353, 400

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 342, 473
Sorry, prediction GeneMark_model.109648_t fails validation.
(GAG)	 AG	342-473	GT	AGG
(ACA)	 AG	725-769	GT	AAG
(ACC)	 AG	816-829	GT	AGG
(AGG)	 AG	887-908	GA	GAG
-recovered GeneMark_model.109648_t, terminal, 887, 908
-recovered GeneMark_model.109648_t, internal, 342, 473
-recovered GeneMark_model.109648_t, internal, 725, 769
-recovered GeneMark_model.109648_t, internal, 816, 829
Couldn't classify 342, 473
Sorry, prediction Augustus_model.g41795.t1 fails validation.
(GAG)	 AG	342-473	GT	AGG
(ACA)	 AG	725-829	GT	AGG
(CTG)	 AG	1203-1305	GT	AGG
(GGT)	 AG	1725-1729	GA	GAG
-recovered Augustus_model.g41795.t1, terminal, 1725, 1729
-recovered Augustus_model.g41795.t1, internal, 342, 473
-recovered Augustus_model.g41795.t1, internal, 725, 829
-recovered Augustus_model.g41795.t1, internal, 1203, 1305
Couldn't classify 342, 473
Couldn't classify 1203, 1305
Sorry, prediction snap_scaffold_1713-snap.1-T1 fails validation.
(GAG)	 AG	342-473	GT	AGG
(ACA)	 AG	725-829	GT	AGG
(CTG)	 AG	1203-1305	GT	AGG
-recovered snap_scaffold_1713-snap.1-T1, internal, 342, 473
-recovered snap_scaffold_1713-snap.1-T1, internal, 725, 829
-recovered snap_scaffold_1713-snap.1-T1, internal, 1203, 1305

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2014
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support