-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1712

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 43, 122
Couldn't classify 1443, 1505
Sorry, prediction GeneMark_model.109645_t fails validation.
(GCT)	 AG	43-122	GT	CTG
(GCC)	 AG	227-239	GT	GAG
(CAG)	 AG	311-362	GT	CTG
(GAG)	 AG	1406-1416	GT	GGG
(GAA)	 AG	1443-1505	GT	AAG
-recovered GeneMark_model.109645_t, internal, 43, 122
-recovered GeneMark_model.109645_t, internal, 227, 239
-recovered GeneMark_model.109645_t, internal, 311, 362
-recovered GeneMark_model.109645_t, internal, 1406, 1416
-recovered GeneMark_model.109645_t, internal, 1443, 1505
Couldn't classify 227, 336
Couldn't classify 1685, 1742
Sorry, prediction snap_scaffold_1712-snap.1-T1 fails validation.
(GCC)	 AG	227-336	GT	AGG
(TTG)	 AG	1060-1130	GT	AGG
(ACG)	 AG	1685-1742	GT	TGG
-recovered snap_scaffold_1712-snap.1-T1, internal, 227, 336
-recovered snap_scaffold_1712-snap.1-T1, internal, 1060, 1130
-recovered snap_scaffold_1712-snap.1-T1, internal, 1685, 1742

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2016
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support