-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1710

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 32, 151
Sorry, prediction GeneMark_model.109644_t fails validation.
(GTC)	 AG	32-151	GT	AGG
(ATG)	 AG	265-323	GT	AGG
(AGG)	 AG	417-443	GT	TGG
(CCC)	 AG	540-598	AC	AAA
add_exon() Sorry, GeneMark_model.109644_t 265-323-initial-1 is invalid.
-recovered GeneMark_model.109644_t, initial, 265, 323
-recovered GeneMark_model.109644_t, terminal, 540, 598
-recovered GeneMark_model.109644_t, internal, 32, 151
-recovered GeneMark_model.109644_t, internal, 265, 323
-recovered GeneMark_model.109644_t, internal, 417, 443

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1779, 1976
Sorry, prediction Augustus_model.g41794.t1 fails validation.
(ATG)	 GT	742-751	GT	GGG
(GCA)	 AG	1779-1976	GT	AGG
-recovered Augustus_model.g41794.t1, initial, 742, 751
-recovered Augustus_model.g41794.t1, internal, 1779, 1976
Couldn't classify 1779, 1976
Sorry, prediction snap_scaffold_1710-snap.1-T1 fails validation.
(GCA)	 AG	1779-1976	GT	AGG
-recovered snap_scaffold_1710-snap.1-T1, internal, 1779, 1976

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2019
-exon list size: 8


building trellis

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90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support