-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_171

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_171-snap.1-T1
Couldn't classify 903, 911
Sorry, prediction GeneMark_model.106816_t fails validation.
(AAC)	 AG	903-911	GT	GGG
(AAC)	 AG	1013-1021	GT	GGG
(AGG)	 AG	1061-1084	GT	GGG
(GGT)	 AG	1105-1173	GT	GGG
(AAC)	 AG	1212-1241	GT	GGG
(GTG)	 AG	1279-1291	CT	AGC
-recovered GeneMark_model.106816_t, terminal, 1279, 1291
-recovered GeneMark_model.106816_t, internal, 903, 911
-recovered GeneMark_model.106816_t, internal, 1013, 1021
-recovered GeneMark_model.106816_t, internal, 1061, 1084
-recovered GeneMark_model.106816_t, internal, 1105, 1173
-recovered GeneMark_model.106816_t, internal, 1212, 1241
Valid prediction for GeneMark_model.106818_t
Couldn't classify 7439, 7511
Sorry, prediction GlimmerHMM_glimmerT_61446-T1 fails validation.
(ATG)	 GT	1024-1126	GT	GGG
(GAA)	 AG	7439-7511	GT	TGG
-recovered GlimmerHMM_glimmerT_61446-T1, initial, 1024, 1126
-recovered GlimmerHMM_glimmerT_61446-T1, internal, 7439, 7511

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5520, 5878
Sorry, prediction snap_scaffold_171-snap.2-T1 fails validation.
(AGG)	 AG	5520-5878	GT	AGG
(GCT)	 AG	6945-7029	GT	GGG
(CCT)	 AG	8285-8386	GT	GGG
(CCT)	 AG	8583-8691	GA	AAG
-recovered snap_scaffold_171-snap.2-T1, terminal, 8583, 8691
-recovered snap_scaffold_171-snap.2-T1, internal, 5520, 5878
-recovered snap_scaffold_171-snap.2-T1, internal, 6945, 7029
-recovered snap_scaffold_171-snap.2-T1, internal, 8285, 8386
Valid prediction for GeneMark_model.106817_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 10977
-exon list size: 45


building trellis

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12.8    
14.9    
17.0    
19.1    
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25.5    
27.7    
29.8    
31.9    
34.0    
36.2    
38.3    
40.4    
42.6    
44.7    
46.8    
48.9    
51.1    
53.2    
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59.6    
61.7    
63.8    
66.0    
68.1    
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74.5    
76.6    
78.7    
80.9    
83.0    
85.1    
87.2    
89.4    
91.5    
93.6    
95.7    
97.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support