-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1704

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 225, 294
Sorry, prediction snap_scaffold_1704-snap.1-T1 fails validation.
(ACG)	 AG	225-294	GT	AAG
(CAG)	 AG	551-703	GA	GAG
-recovered snap_scaffold_1704-snap.1-T1, terminal, 551, 703
-recovered snap_scaffold_1704-snap.1-T1, internal, 225, 294
Valid prediction for GeneMark_model.109639_t
Couldn't classify 551, 560
Sorry, prediction GeneMark_model.109640_t fails validation.
(CAG)	 AG	551-560	GT	TGG
(GCA)	 AG	678-821	GT	GAG
(AGA)	 AG	855-945	GG	AAG
-recovered GeneMark_model.109640_t, terminal, 855, 945
-recovered GeneMark_model.109640_t, internal, 551, 560
-recovered GeneMark_model.109640_t, internal, 678, 821
Valid prediction for GlimmerHMM_glimmerT_62786-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2028
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support