-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1702

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 417, 519
Sorry, prediction Augustus_model.g41791.t1 fails validation.
(GAG)	 AG	417-519	GT	AGG
(TGT)	 AG	823-838	GT	AGG
(GAC)	 AG	1343-1348	TT	AAT
-recovered Augustus_model.g41791.t1, terminal, 1343, 1348
-recovered Augustus_model.g41791.t1, internal, 417, 519
-recovered Augustus_model.g41791.t1, internal, 823, 838

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62784-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62784-T1 1463-1718-terminal-1 is invalid.
Couldn't classify 887, 1056
Sorry, prediction snap_scaffold_1702-snap.1-T1 fails validation.
(GTG)	 AG	887-1056	GT	AGG
(CAA)	 AG	1483-1718	CG	GAC
-recovered snap_scaffold_1702-snap.1-T1, terminal, 1483, 1718
-recovered snap_scaffold_1702-snap.1-T1, internal, 887, 1056
Couldn't classify 718, 930
Couldn't classify 1547, 1643
Sorry, prediction GeneMark_model.109637_t fails validation.
(AGA)	 AG	718-930	GT	AGG
(ACA)	 AG	955-984	GT	GGG
(ACG)	 AG	1012-1056	GT	AGG
(GAT)	 AG	1547-1643	GT	ACG
-recovered GeneMark_model.109637_t, internal, 718, 930
-recovered GeneMark_model.109637_t, internal, 955, 984
-recovered GeneMark_model.109637_t, internal, 1012, 1056
-recovered GeneMark_model.109637_t, internal, 1547, 1643

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2030
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support