-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1700

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6, 173
Sorry, prediction GlimmerHMM_glimmerT_62783-T1 fails validation.
(GAG)	 AG	6-173	GT	AGG
(GAG)	 AG	260-652	AG	AGA
-recovered GlimmerHMM_glimmerT_62783-T1, terminal, 260, 652
-recovered GlimmerHMM_glimmerT_62783-T1, internal, 6, 173
Couldn't classify 37, 45
Sorry, prediction GeneMark_model.109635_t fails validation.
(GAG)	 AG	37-45	GT	AGG
(GTG)	 AG	70-84	GT	AGG
(GAG)	 AG	111-122	GT	AGG
(GGA)	 AG	143-223	GT	CTG
(GCT)	 AG	376-652	AG	AGA
-recovered GeneMark_model.109635_t, terminal, 376, 652
-recovered GeneMark_model.109635_t, internal, 37, 45
-recovered GeneMark_model.109635_t, internal, 70, 84
-recovered GeneMark_model.109635_t, internal, 111, 122
-recovered GeneMark_model.109635_t, internal, 143, 223
Couldn't classify 43, 173
Couldn't classify 1867, 1971
Sorry, prediction snap_scaffold_1700-snap.1-T1 fails validation.
(GAG)	 AG	43-173	GT	AGG
(GGG)	 AG	480-665	GT	TGG
(ATC)	 AG	1867-1971	GT	TGG
-recovered snap_scaffold_1700-snap.1-T1, internal, 43, 173
-recovered snap_scaffold_1700-snap.1-T1, internal, 480, 665
-recovered snap_scaffold_1700-snap.1-T1, internal, 1867, 1971
Couldn't classify 480, 530
Couldn't classify 1867, 1971
Sorry, prediction Augustus_model.g41790.t1 fails validation.
(GGG)	 AG	480-530	GT	TTG
(ATC)	 AG	1867-1971	GT	TGG
-recovered Augustus_model.g41790.t1, internal, 480, 530
-recovered Augustus_model.g41790.t1, internal, 1867, 1971

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2031
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support